Date: Thu, 28 Mar 2024 22:11:17 +0000 (UTC) Message-ID: <289431969.5.1711663877173@67e5779a1af7> Subject: Exported From Confluence MIME-Version: 1.0 Content-Type: multipart/related; boundary="----=_Part_4_1901395417.1711663877173" ------=_Part_4_1901395417.1711663877173 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Content-Location: file:///C:/exported.html
Research Computing provides a website for users of the O2= cluster to present their data via HTTP for use with external genome= browsers such the UCSC Genome Browser.
You can run IGV on O2 itself to analyz= e data from any location on O2, without needing any additional group access= . To do this, just login via the O2 Portal which i= s designed to easily run GUI applications.
Just point your web browser to: o2portal.rc.hms.harvard.edu= and login using your HMS ID credentials
To access this tool, the user must have an O2 cluster account and be a m= ember of the group: genomebrowser-uploads
You can apply for an O2 account via our online request form (HMS ID login is req= uired to use the form).
To add your O2 account to group genomebrowser-uploads, please send us a support request: rchelp@hms.harvard.e= du
Once you have an O2 account with access, you can make your data presenta= ble with the following steps:
Create your personal data directory under: /n/groups/ge=
nomebrowser-uploads/data/
For example (e.g. for user abc123): /n/groups/genomebrowser-uploads/data= /abc123
Copy your data files under the personal directory:
For example: /n/groups/genomebrowser-uploads/data/abc123/mydata.bam
<= /li>Make sure your data files are set as world-readable (typically the defau= lt), so the web server can access them.
View your data via this public URL: http://genomebrowse= r-uploads.hms.harvard.edu/data/[USER_DIRECTORY]/[USER_DATA]
In this example, the URL would be: http://genomebrowser-uploads.hms.harv= ard.edu/data/abc123/mydata.bam
Please remove your data files once analysis has been completed= strong>!
There is no file expiration policy at this time under the data directory= , so we ask all users to please remove their data once analysis has= been completed!
A maximum storage quota (for all user data combined) is maintained on th= e data directory, currently set at 15 TiB.