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The prompt inside the terminal should change to contain the Conda environment name in parenthesis, in this case (openfold_test). We will add additional python modules and set up CUDA kernels using the commands below
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# - This next command is optional, at this time if there are any errors from installing # - flash-attention, skip the step. (openfold_test)$ python3 -m pip install git+https://github.com/HazyResearch/flash-attention.git@5b838a8bef78186196244a4156ec35bbb58c337d (openfold_test)$ python3 -m pip install nvidia-pyindex (openfold_test)$ conda install -c conda-forge openmm=7.5.1 (openfold_test)$ wget -qnc https://raw.githubusercontent.com/deepmind/alphafold/main/docker/openmm.patch --no-check-certificate (openfold_test)$ (cd ${openfold_dir}/openfold-conda/lib/python3.7/site-packages; patch -s -p0 < openmm.patch) (openfold_test)$ python3 -m pip install nvidia-pyindex # - This next command is optional, at this time if there are any errors from installing # - flash-attention, skip the step. (openfold_test)$ python3 -m pip install git+https://github.com/HazyResearch/flash-attention.git@5b838a8bef78186196244a4156ec35bbb58c337d (openfold_test)$ python3 setup.py install |
Download Parameters and Other Components
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