RC 1.2 (drafts)

• Run Bash Script As Slurm Pipeline through rcbio/1.2

• Get more informative slurm email notification and logs through rcbio/1.2

• skewer, FastQC, Hisat2 and HtseqCount through rcbio/1.2

• Build Folder Structures From Sample Sheet for rcbio NGS Workflows using rcbio/1.2

RC 1.1

• Run Bash Script As Slurm Pipeline through rcbio/1.1

• skewer, FastQC, Hisat2 and HtseqCount through rcbio/1.1

• skewer, FastQC, Hisat2, Stringtie and Ballgown through rcbio/1.1

• Kallisto And Sleuth For RNASeq through rcbio/1.1

• rsem-1.3.0 with bowtie-2.2.9

• HTSeq through module rcbio/1.1

• bowtie2 through module rcbio/1.1

• bwa through module rcbio/1.1

• STAR through module rcbio/1.1

• Build Folder Structures From Sample Sheet for rcbio NGS Workflows

• Fastx, Bowtie2 and MACS2 for ChipSeq (testing phase)

• spp (1.15.2) for ChipSeq

• Juicer

RC 1.0

• Run Bash Script As Slurm Pipeline through rcbio/1.0