Get more informative slurm email notification and logs through rcbio/1.3.3

Owned by Lingsheng Dong

Last updated: Dec 11, 2023

3 min read

1 Log on to O2
2 Start interactive job, and create working folder
3 Load the pipeline related modules
4 The bash script
5 Submit the script to Slurm:
6 Monitoring the jobs
7 Check job log
8 Re-run the job
9 To run your own script as Slurm pipeline

This page shows you how to run submit a bash script to Slurm. The runSingle script, accessible through the