...
How to load and use the AlphaFold module
Here are the instructions to run AlphaFold in an interactive session. Since AlphaFold takes hours to run, you will more likely want to submit a batch job, which is described later.
| Code Block |
|---|
$ module load alphafold/2.2.0 alphafold.py --fasta_paths=/path/to/fastafile --max_template_date=2020-05-14 --db_preset=full_dbs --output_dir=/path/to/output --data_dir=/n/shared_db/alphafold/ |
...