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Class

Date

Time

Location

Training Materials

Registration

Intro to O2

Wednesday, February 21, 2024

10am to 12pm

In-person

User Training github

Register here!

O2 Portal - Simplifying the Interaction and Experience of Using an HPC Environment

Wednesday, March 6, 2024

10am to 12pm

Virtual

User Training github

Register here!

Intro to MATLAB

Wednesday, March 13, 2024

10am to 12pm

In-person

User Training github

Register here!

Intro to Parallel Computing

Wednesday, March 20, 2024

10am to 12pm

In-person

User Training github

Register here!

Optimizing O2 Jobs

Wednesday, April 3, 2024

10am to 12pm

In-person

User Training github

Register here!

Intro to Python

Wednesday, April 10, 2024

10am to 12pm

In-person

User Training github

Register here!

Troubleshooting O2 Jobs

Wednesday, April 24, 2024

10am to 12pm

Virtual

User Training github

Register here!

Intro to O2

Wednesday, May 1, 2024

10am to 12pm

Virtual

User Training github

Register here!

Medical Image Processing and Machine Learning Workflow

(Taught by Mathworks)

Wednesday, May 15, 2024

10am to 12pm

In-person

Register here!

RCBio: easy and quick HPC pipeline builder & runner

Wednesday, May 22, 2024

10am to 12pm

Virtual

User Training github

Register here!

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Classes sponsored by HMS Research Computing but taught by our partner organizations:

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title Medical Image Processing and Machine Learning Workflow

Overview

Medical images are obtained from various sources including MRI, CT, X-ray, ultrasound, and PET scans. Analyzing these images necessitates a comprehensive environment for data access, visualization, processing, and algorithm development. A key challenge involves extracting quantitative features to generate clinically relevant information using advanced techniques like machine learning algorithms.  This presentation will explore radiomics, which captures characteristics not typically visible. Radiomics features can be employed across various medical imaging modalities and applications, enabling the study of associations between imaging features and patient biology, as well as the prediction of clinical outcomes, making radiomics a versatile technique in medical imaging. These features quantify shape, intensity, and texture characteristics within medical images, reducing reliance on subjective interpretation for clinical workflows.

Highlights

In this session, you will learn how to:

  • Import and manage large sets of images without loading them into memory,

  • Extract shape, intensity, and texture radiomics features,

  • Reduce the number of extracted features for classification,  

  • Build a deep learning network to classify images, and

  • Review and analyze the results.

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titleBioGrids Academic Software Platform: No Installation Required

Academic Software Platform (ASP) integrates two major stacks of scientific software: BioGrids stack of ~400 biomedical applications (https://biogrids.org/software/) as well as SBGrid stack of ~500 structural biology applications. Multiple versions of applications are maintained, and users can also easily install the same stack of software on laptops, research workstations or cloud resources, under Linux or Mac OS X operating systems. More information about this resource is available on O2 wiki: https://harvardmed.atlassian.net/wiki/spaces/O2/pages/1630994700/Using+Software+Provided+by+BioGrids

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