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1. ssbatch: An sbatch wrapper with a custom function to estimate memory RAM and time based on several factors (i.e., program type, input size,previous job records). Once the memory and time values are estimated, jobs are submitted to the scheduler while keeping a record of the jobs history and sending an optional email notification.

2. runAsPipeline: It parses bash script to find user defined commands and call ssbatch to submit jobs to slurm. It take care of job dependency.

SmartSlurm

• Smart sbatch

  • ssbatch features

  • How to use ssbatch

  • How does ssbatch work

  • Smart sbatch FAQ

    • Do I need to wait for the first 3 jobs finish before my future jobs get an estimated resource?

    • Is -F optional?

    • Is -P optional?

    • Is -I optional?

    • Can -I directly take file size or job size?

    • Can I have -c x?

    • How about multiple inputs?

    • What is the logic to get unique job flag?

    • What is the logic to estimate memory and time?

• Use ssbatch in Snakemake pipeline

• Use ssbatch in Cromwell pipeline

• Use ssbatch in Nextflow pipeline

• Run bash script as smart pipeline using smart sbatch

  • Smart pipeline features

  • How to use smart pipeline

  • How does smart pipeline work

  • runAsPipeline FAQ

    • Do I need to wait for the first 5 jobs finish before my future jobs get an estimated resource?

    • Can -I directly take file size or job size?

    • Can I have -c x

    • How about multiple inputs

• sbatchAndTop

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