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General Commands

Command

Meaning

module spider R

shows the version of R installed on O2

module spider R/<version>

shows if other module(s) needs to be loaded to use R (e.g., gcc/9.2.0)

module load gcc/9.2.0 R/4.1.2

loads an individual module (i.e., R/4.1.2)

module unload R/4.1.2

unloads an individual module (i.e., R/4.1.2)

which R

shows the current version of R loaded

> installed.packages()

From R, shows

Setting up a Personal R Library

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Code Block
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install(version = "3.14")
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The latest Bioconductor release is 3.15 but requires >=R/4.2.0. Unfortunately, the patched version of R is not available yet. Therefore, it cannot be installed as a module on O2. HMS-RC is planning to install R/4.2.1 once become available.

Installing Packages Using CRAN

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