|
...
For workflows that write temp/intermediate files to the current directory, you can create a directory under /n/scratch3scratch and cd to it. Run the workflow from your scratch3 directory, specifying full paths to input files in /n/groups or /home and full final output paths to /n/groups or /home. Here is a suggested workflow using example ID "ab123":
...
For workflows that allow little flexibility in the location of temporary/intermediate files, data can be copied over to /n/scratch3scratch, computed against there, and copied back to /n/groups or /home. This creates a redundant copy of the input, takes up storage space, and requires time to transfer the data to and from /n/scratch3scratch. Here is a suggested workflow:
...
GPU dedicated scratch space (/n/scratch_gpu/users/a/ab123)
Research Computing is no longer providing the /n/scratch_gpu filesystem. Please use /n/scratch instead.
Accessing folders on "research.files.med.harvard.edu" from O2
...