Page Comparison

...

/n/cluster/container-scanning/bin/cl-submit-container --help

...

Basic cl-submit-container tool usage takes the following form:

$ /n/cluster/bin/cl-submit-container [image_source]

...

$ /n/cluster/container-scanning/bin/cl-submit-container --status
Job Name         Status          Log file
nginx.dockerfile FAILED          /n/app/singularity/userlogs/<HMSID>/nginx.dockerfile-2024-07-25T09:51:19.log

If a container fails to install, you can run the command /n/cluster/container-scanning/bin/cl-submit-container -r to see a detailed log of the process.

...

1. Create a Singularity image called nginx with the nginx container pulled from Docker Hub URI:

   Code Block
   language bash
   $ /n/cluster/container-scanning/bin/cl-submit-container -n nginx docker://nginx:latest

2. Create a Singularity container called genomics from a Dockerfile (note:-n genomics is used to name the image genomics instead of genomics_workflow)

   Code Block
   language bash
   $ /n/cluster/container-scanning/bin/cl-submit-container -n genomics ~/CONTAINERS/working_dir/genomics_workflow.dockerfile

3. Create a Singularity container from a Singularity definition file:

   Code Block
   language bash
   $ /n/cluster/container-scanning/bin/cl-submit-container ~/ollama.def