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Current Training Schedule:
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Fall 2024
Please note that we are transitioning to offering classes on Thursdays, when we have held classes on Wednesdays for many years.
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Please note the location for your selected class. We are offering both in-person and virtual classes this year. Important note: for virtual classes, you should receive an confirmation email from the Harvard Training Portal with a Zoom link. If you do not have your email address on file in the Training Portal, such messages cannot be sent to you. Please contact us for the Zoom meeting details if you do not get a confirmation email. |
Class | Date | Time | Location | Training Materials | Registration | |||||
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Intro to O2MATLAB | WednesdayThursday, February 21September 19, 2024 | 10am to 12pm | In-persononline | O2 Portal - Simplifying the Interaction and Experience of Using an HPC Environment | Wednesday, March 6||||||
Intro to Parallel Computing | Thursday, September 26, 2024 | 10am to 12pm | Virtualonline | Intro to MATLAB | ||||||
Optimizing O2 Jobs | Thursday, October 3, 2024 | 10am to 12pm | In-in person | |||||||
Intro to Parallel ComputingPython | WednesdayThursday, March 20October 10, 2024 | 10am to 12pm | In-persononline | Optimizing O2 Jobs | Wednesday, April 3||||||
Class in collaboration with MathWorks, subject TBA | Thursday, October 17, 2024 | 10am to 12pm | In-in person | Intro to Python | Wednesday, April 10Coming soon! | |||||
Data Management: Computing Strategies and Resources (in collaboration with Countway Library and FAS Research Computing) | Thursday, October 24, 2024 | 10am to 12pm | In-person | online | Troubleshooting O2 Jobs | Wednesday, April 24|||||
O2 Portal - Simplifying the Interaction and Experience of Using an HPC Environment | Thursday, October 31, 2024 | 10am to 12pm | Virtualonline | |||||||
Intro to O2Python | WednesdayThursday, May 1November 14, 2024 | 10am to 12pm | Virtualonline | Medical Image Processing and Machine Learning Workflow (Taught by Mathworks) | Wednesday, May 15||||||
Intro to O2 | Thursday, November 21, 2024 | 10am to 12pm | In-in person | |||||||
RCBio: easy and quick HPC pipeline builder & runner | WednesdayThursday, May 22December 5, 2024 | 10am to 12pm | Virtualonline | HBC Current Topics in Bioinformatics: Shell Tips and Tricks on O2 | Wednesday, May 22, 2024 | 1pm to 4pm | Virtual | Register here!(Sponsored by HBC in collaboration with RC) |
Additional classes will be added for the Summer Spring semester.
Class Registration Process
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Overview Medical images are obtained from various sources including MRI, CT, X-ray, ultrasound, and PET scans. Analyzing these images necessitates a comprehensive environment for data access, visualization, processing, and algorithm development. A key challenge involves extracting quantitative features to generate clinically relevant information using advanced techniques like machine learning algorithms. This presentation will explore radiomics, which captures characteristics not typically visible. Radiomics features can be employed across various medical imaging modalities and applications, enabling the study of associations between imaging features and patient biology, as well as the prediction of clinical outcomes, making radiomics a versatile technique in medical imaging. These features quantify shape, intensity, and texture characteristics within medical images, reducing reliance on subjective interpretation for clinical workflows. Highlights In this session, you will learn how to:
Class Materials |
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Academic Software Platform (ASP) integrates two major stacks of scientific software: BioGrids stack of ~400 biomedical applications (https://biogrids.org/software/) as well as SBGrid stack of ~500 structural biology applications. Multiple versions of applications are maintained, and users can also easily install the same stack of software on laptops, research workstations or cloud resources, under Linux or Mac OS X operating systems. More information about this resource is available on O2 wiki: https://harvardmed.atlassian.net/wiki/spaces/O2/pages/1630994700/Using+Software+Provided+by+BioGrids |
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