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  • Create a directory under /n/scratch if needed.

  • Copy data from /n/groups, /home, or your desktop to your scratch3 scratch directory. We recommend submitting this as an sbatch job, or be copied from an interactive session (e.g. srun --pty -p interactive -t 0-12:00 /bin/bash)

  • Run the analysis in your scratch directory, writing all temporary/intermediate files to this space

  • Copy any needed results back to your home or group directory on O2 via a cluster job or from an interactive session, or download to your desktop via the O2 file transfer servers (transfer.rc.hms.harvard.edu)

  • Delete temporary data, or let it be auto-deleted

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GPU dedicated scratch space (/n/scratch_gpu/users/a/ab123)

Research Computing is no longer providing the /n/scratch_gpu filesystem. Please use /n/scratch instead.

Accessing folders on "research.files.med.harvard.edu" from O2

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