...
If the user wants to submit jobs using the lab1 SLURM account, then
From the command line: Interactive Job (Resources requested: use SLURM account
lab1, 30 minutes of walltime, 2 threads, and 2GB of memory)srun --account=lab1 -t 30:00[….other job arguments]sbatch--pty -p interactive -c 2 --mem=2G bash
Non-interactive or sbatch job
#SBATCH --account=lab1 [..other job parameters..]
In an sbatch script:
#SBATCH --account=lab1
See below for an example using it within the script called
sbatch_R_example.slurm
| Code Block | ||
|---|---|---|
| ||
$ cat sbatch_R_example.slurm
#!/bin/bash
#SBATCH --account=lab1
#SBATCH -p short # Partition to submit to
#SBATCH -t 0-00:01 # Time in minutes DD-HH:MM; DD-HH; MM:SS
#SBATCH -c 1 # Number of cores requested
#SBATCH -N 1 # Ensure that all cores are on one machine
#SBATCH --mem=2G # Memory total in GB
#SBATCH -o hostname.%j.out # Standard out goes to this file
#SBATCH -e hostname.%j.err # Standard err goes to this file
# Commands below
module load gcc/6.2.0
module load R/3.6.1
# To run a R script called my_r_script.R
Rscript my_r_script.R
# Submit non-interactive job
sbatch sbatch_R_example.slurm |