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srun --pty -p interactive -t 0-02:0:0 --mem 2000MB -n 1 /bin/bash |
Create a work directory in /n/scratch2/, and working directory on scratch and change into the newly-created directory. For example, for user abc123, the working directory will be
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mkdir -p /n/scratch2/$USERscratch3/users/a/abc123/rsem cd /n/scratch3/scratch2users/a/$USERabc123/rsem |
Load modules and setup path, then copy some test data. For details to use your own data, please visit this page: Build Folder Structures From Sample Sheet for rcbio NGS Workflows
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