RC workflows

RCBio 1.3.3

• Run Bash Script As Slurm Pipeline through rcbio/1.3.3

• Get more informative slurm email notification and logs through rcbio/1.3.3

• Build Folder Structures From Sample Sheet for rcbio NGS Workflows using rcbio/1.3.3

• Skewer, FastQC, Hisat2 and HtseqCount through rcbio/1.3.3

• Skewer, FastQC, Hisat2, Stringtie and Ballgown through rcbio/1.3.3

• Kallisto And Sleuth For RNASeq through rcbio/1.3.3

• Rsem-1.3.0 with bowtie-2.2.9

• HTSeq through module rcbio/1.3.3

• Bowtie2 through module rcbio/1.3.3

• Bwa through module rcbio/1.3.3

• STAR through module rcbio/1.3.3

• Fastx, Bowtie2 and MACS2 for ChipSeq

RCBio 1.2

• Run Bash Script As Slurm Pipeline through rcbio/1.2

Others

• Run Bash Script As Slurm Pipeline through rcbio/1.1

• spp (1.15.2) for ChipSeq

• Juicer