NOTICE: FULL O2 Cluster Outage, January 3 - January 10th

O2 will be completely offline for a planned HMS IT data center relocation from Friday, Jan 3, 6:00 PM, through Friday, Jan 10

  • on Jan 3 (5:30-6:00 PM): O2 login access will be turned off.
  • on Jan 3 (6:00 PM): O2 systems will start being powered off.

This project will relocate existing services, consolidate servers, reduce power consumption, and decommission outdated hardware to improve efficiency, enhance resiliency, and lower costs.

Specifically:

  • The O2 Cluster will be completely offline, including O2 Portal.
  • All data on O2 will be inaccessible.
  • Any jobs still pending when the outage begins will need to be resubmitted after O2 is back online.
  • Websites on O2 will be completely offline, including all web content.

More details at: https://harvardmed.atlassian.net/l/cp/1BVpyGqm & https://it.hms.harvard.edu/news/upcoming-data-center-relocation

How to troubleshoot the sratoolkit/2.10.7 module

Owned by Gaby Rodriguez
Last updated: May 06, 2021 by Neil Coplan
1 min read

vdb-config message - if using the module sratoolkit/2.10.7 for the first time, the command prefetch can show the following message:

$ prefetch -h This sra toolkit installation has not been configured. Before continuing, please run: vdb-config --interactive

If so, please enter the following:

vdb-config --restore-defaults

Then, you should be able to use the prefetch command as expected.



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