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Create a working directory on scratch and change into the newly-created directory. For example, for user abc123, the working directory will be
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mkdir /n/scratch3scratch/users/a/abc123/rsem cd /n/scratch3scratch/users/a/abc123/rsem |
Load modules and setup path, then copy some test data. For details to use your own data, please visit this page: Build Folder Structures From Sample Sheet for rcbio NGS Workflows
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