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Class

Date

Time

Location

Seats

Training Materials

Registration (Only click here to register!)

Intro to O2

Wednesday, February 3, 2021

3-5pm

Virtual

30

User Training github

Registration link

Intro to Python

Wednesday, February 10, 2021

3-5pm

Virtual

30

User Training github

Registration link

No class

Wednesday, February 17, 2021






Intro to Matlab

Wednesday, February 24, 2021

3-5pm

Virtual

50

User Training github

Registration link

Intro to Git + Github (moved to next week)

Wednesday, March 3, 2021

3-5pm

Virtual

30

User Training github

Registration link

Intro to Git + Github

Wednesday, March 10, 2021

3-5pm

Virtual

30

User Training github

Registration link

No class

Wednesday, March 17, 2021






Intermediate O2

Wednesday, March 24, 2021

3-5pm

Virtual

30

User Training github

Registration link

Intro to Python

Wednesday, March 31, 2021

3-5pm

Virtual

30

User Training github

Registration link

Intro to Parallel Computing

Wednesday, April 7, 2021

3-5pm

Virtual

50

User Training github

Registration link

Intro to R

Wednesday, April 14, 2021

3-5pm

Virtual

30

User Training github

Registration link

Intro to O2

Wednesday, April 21, 2021

3-5pm

Virtual

30

User Training github

Registration link

No class

Wednesday, April 28, 2021






No class

Wednesday, May 5, 2021






Intro to Python (cancelled)

Wednesday, May 12, 2021

3-5pm

Virtual

30

User Training github

Registration link

Introduction to Globus Data Transfer and Data Collaboration on O2 (move to June 9th)

Wednesday, May 19, 2021

3-5pm

Virtual

30

User Training github

Registration link

Intro to R

Wednesday, May 26, 2021

3-5pm

Virtual

30

User Training github

Registration link

Intro to O2

Wednesday, June 2, 2021

3-5pm

Virtual

30

User Training github

Registration link

Introduction to Globus Data Transfer and Data Collaboration on O2

Wednesday, June 9, 2021

3-5pm

Virtual

30

User Training github

Registration link


Intro to O2

O2 for New Users addresses the needs of users who have very little linux experience, and are just getting started with HPC. More time will be devoted to covering linux basics, and the concepts of schedulers and jobs, and data management best practices. The lecture portion of this class is one hour, the second hour will be spent clinic-style with HMS RC staff to address workflow-specific questions and help convert commands to O2 SLURM syntax.

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Intro to using R and Bioconductor. R is a powerful, open-source, highly adaptable statistical language useful for crunching numbers to datasets like those produced by next-gen sequencing. This class covers R basics and learning to think like/understand R. Users will learn how to set up personal R libraries on O2, and use O2 R for its high memory allocations and parallelization. Topics include how to install packages, learn about variables, data types. data manipulation, flow control, and functions, perform simple statistical tests, and create a variety of plots. Laptops are encouraged.

Class Files Here

Intro to MATLAB

Matlab has become the “language of science” in the past few decades. It is simple to use, yet powerful enough to be productive on large computing infrastructures. If you need: 1) Fast prototyping of research ideas; or 2) avoid spending too much time in coding instead of doing real science by taking advantage of Matlab’s built-in functions; 3) User friendly graphical interface and educational documentation; 4) Simplicity of code; 5) Easy access to GPU computing power; 6) Easy plotting and presentation of data; you will find this introduction course useful. This course will introduce the basics of the MATLAB coding language with O2-scalability and data presentation.

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