Intro to R & Bioconductor
Class Material
Intro to R and Bioconductor - https://github.com/hmsrc/user-training/blob/master/Intro_to_R_and_Bioconductor.pdf
Dataset (download if planning to do the exercise)
Connect to O2
ssh -Y -L $PORT:127.0.0.1:$PORT <your_HMS_ID>@o2.hms.harvard.eduManaging your R packages on O2
Create an R Personal Library
# Create a library on your HOME ("~") directory
mkdir ~/R-4.1.1
# Create an .Renviron file
echo 'R_LIBS_USER="~/R-4.1.1"'> $HOME/.RenvironRunning RStudio on O2
For more in-depth details, please visit our wiki page - RStudio on O2.
Load RStudio modules
module load rstudio_launcher/1.0
module load gcc/6.2.0
module load R/4.1.1
module load git/2.9.5Launch RStudio
intro.R
Installing R Packages
Comprehensive R Archive Network (CRAN)
Bioconductor
GitHub