Due to Aspera license limitations, users have to install the software under their home to user the software.
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Start interactive job, and create working folder and load sratoolkit modue
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srun --pty -p interactive -t 0-12:0:0 --mem 2000MB -n 1 /bin/bash mkdir /n/scratch3scratch/users/${USER:0:1}/${USER}/testDbGaP cd /n/scratch3scratch/users/${USER:0:1}/${USER}/testDbGaP module load sratoolkit/2.10.7 |
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# Configure sratoolkit vdb-config --interactive # Directly press x key to quit # By default, sratoolkit uses working diretory as cache. It is better to use scratch3scratch instead: echo /repository/user/main/public/root = \"/n/scratch3scratch/users/${USER:0:1}/${USER}/ncbi\" >> ~/.ncbi/user-settings.mkfg |
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