Title: Using Slurm Basic  
Owner: Kathleen Chappell
Creator: Kathleen Chappell Dec 22, 2016
Last Changed by: Kathleen Chappell Apr 12, 2024
Tiny Link: (useful for email) https://harvardmed.atlassian.net/wiki/x/oIyUXg
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HMS IT RC O2 (17)
    Page: Code Server on O2
    Page: Filesystem Quotas
    Page: Frequently Asked Questions and Answers
    Page: GATK4 Mutect2 using Singularity Container
    Page: Get more informative slurm email notification and logs through rcbio/1.3.3
    Page: How to login to O2
    Page: Moving from Orchestra to O2
    Home page: O2
    Page: OpenFold On O2
    Page: Run Bash Script As Slurm Pipeline through rcbio/1.0
    Page: Run Bash Script As Slurm Pipeline through rcbio/1.1
    Page: Run Bash Script As Slurm Pipeline through rcbio/1.2
    Page: Run Bash Script As Slurm Pipeline through rcbio/1.3.3
    Page: Troubleshooting Slurm Jobs
    Page: Using (Local)ColabFold on O2
    Page: Using AlphaFold on O2
    Page: Using Java on O2
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Time Editor  
Apr 12, 2024 17:52 Kathleen Chappell View Changes
Apr 12, 2024 17:46 Kathleen Chappell View Changes
Dec 07, 2023 21:00 Andy Bergman View Changes
Dec 07, 2023 20:59 Andy Bergman View Changes
Dec 07, 2023 20:59 Andy Bergman  
Outgoing Links
External Links (19)
    https://slurm.schedmd.com/sacct.html#lbAF
    https://slurm.schedmd.com/sbatch.html#lbAH
    https://harvardmed.atlassian.net/wiki/spaces/O2/pages/16016…
    mailto:rchelp@hms.harvard.edu
    https://it.hms.harvard.edu/our-services/research-computing/…
    https://wiki.rc.hms.harvard.edu/display/O2/Using+Slurm+Basi…
    https://slurm.schedmd.com/sstat.html#lbAE
    https://wiki.rc.hms.harvard.edu/display/O2/Filesystems#File…
    https://wiki.rc.hms.harvard.edu/display/O2/Get+information+…
    https://slurm.schedmd.com/documentation.html
    https://wiki.rc.hms.harvard.edu/display/O2/Using+O2+GPU+res…
    https://wiki.rc.hms.harvard.edu:8443/display/O2/How+To+Subm…
    https://it.hms.harvard.edu/rc/active
    https://harvardmed.atlassian.net/wiki/spaces/O2/pages/26520…
    https://wiki.rc.hms.harvard.edu/display/O2/How+to+choose+a+…
    mailto:rdmhelp@hms.harvard.edu
    https://it.hms.harvard.edu/rc/standby
    https://slurm.schedmd.com/cgroups.html
    https://wiki.rc.hms.harvard.edu/display/O2/Filesystems#File…
HMS IT RC O2 (11)     Page: How To Submit Parallel Jobs in O2
    Page: Using O2 GPU resources
    Page: Filesystems
    Page: Using X11 Applications Remotely
    Page: File Transfer
    Page: Scratch Storage
    Page: How to choose a partition in O2
    Page: Two Factor Authentication on O2
    Page: Filesystem Quotas
    Page: Troubleshooting Slurm Jobs
    Page: How to login to O2