| Title: | RC workflows | |
|---|---|---|
| Owner: | lingsheng_dong | |
| Creator: | lingsheng_dong | Apr 09, 2018 |
| Last Changed by: | lingsheng_dong | Apr 06, 2022 |
| Tiny Link: (useful for email) | https://harvardmed.atlassian.net/wiki/x/bQBoXw | |
| Export As: | Word · PDF | |
Incoming Links
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HMS IT RC O2 (3)
O2 Run Bash Script As Slurm Pipeline through rcbio/1.1 User Training |
Hierarchy
Children (18)
Bwa through module rcbio/1.3.3
Run Bash Script As Slurm Pipeline through rcbio/1.1
Bowtie2 through module rcbio/1.3.3
HTSeq through module rcbio/1.3.3
Kallisto And Sleuth For RNASeq through rcbio/1.3.3
rsem-1.3.0 with bowtie-2.2.9
Install and run salmon-0.10.0 and Trinity-2.6.6
skewer, FastQC, Hisat2, Stringtie and Ballgown through rcbio/1.3.3
screen: Keep Linux Sessions Alive (so you can go back to the same terminal window from anywhere, anytime)
skewer, FastQC, Hisat2 and HtseqCount through rcbio/1.1
Bwa through module rcbio/1.3.3
Run Bash Script As Slurm Pipeline through rcbio/1.1
Bowtie2 through module rcbio/1.3.3
HTSeq through module rcbio/1.3.3
Kallisto And Sleuth For RNASeq through rcbio/1.3.3
rsem-1.3.0 with bowtie-2.2.9
Install and run salmon-0.10.0 and Trinity-2.6.6
skewer, FastQC, Hisat2, Stringtie and Ballgown through rcbio/1.3.3
screen: Keep Linux Sessions Alive (so you can go back to the same terminal window from anywhere, anytime)
skewer, FastQC, Hisat2 and HtseqCount through rcbio/1.1
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