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HMS IT RC O2
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  • UCSC Genome Browser and IGV access for data on O2
  • Running Singularity Containers in O2
  • Using Java on O2
  • GATK4 Mutect2 using Singularity Container
  • Job Priority
  • O2 HPC Cluster and Computing Nodes Hardware
  • Currently Available Software on O2
  • How to login to O2
  • Personal R Packages
  • How to Generate SSH Keys
  • Using Applications on O2
  • GATK4 RNA-Seq Germline using Singularity Container
  • Tensorflow on O2
  • How to choose a partition in O2
  • Personal Python Packages
  • Conda on O2
  • O2 Cluster Status
  • O2 Command CheatSheet
  • How to request or retain an O2 account
  • Rosetta License
  • VSCode and Code Server on O2
  • Optimizing O2 Jobs
  • Orientation for New O2 Cluster Users
  • Using (Local)ColabFold on O2
  • CheckPointing with DMTCP
  • O2Portal
  • OpenFold On O2
  • Protein Structure Prediction on O2
  • Installing LocalColabFold Locally
  • Improving O2 Efficiency by Changing User Priority
  • Deleting Files from a Directory on O2 After Hitting the Storage Limit
  • Querying O2 Filesystem Quota Usage
  • Installing OpenFold Locally on O2
  • RStudio on O2
  • How to connect to your sbatch running job
  • Installing Difficult Conda Packages on O2
  • Helpful Tips and Tricks
  • Shared Containers on O2
  • Smart Slurm: Dynamic and accurate resource allocation for O2 jobs
  • O2 Operating System Upgrade
  • RoseTTAFold All-Atom on O2
  • Nextflow (`nf-core`) on O2
  • RCBot
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