NOTICE: FULL O2 Cluster Outage, January 3 - January 10th
O2 will be completely offline for a planned HMS IT data center relocation from Friday, Jan 3, 6:00 PM, through Friday, Jan 10
- on Jan 3 (5:30-6:00 PM): O2 login access will be turned off.
- on Jan 3 (6:00 PM): O2 systems will start being powered off.
This project will relocate existing services, consolidate servers, reduce power consumption, and decommission outdated hardware to improve efficiency, enhance resiliency, and lower costs.
Specifically:
- The O2 Cluster will be completely offline, including O2 Portal.
- All data on O2 will be inaccessible.
- Any jobs still pending when the outage begins will need to be resubmitted after O2 is back online.
- Websites on O2 will be completely offline, including all web content.
More details at: https://harvardmed.atlassian.net/l/cp/1BVpyGqm & https://it.hms.harvard.edu/news/upcoming-data-center-relocation
User Training
Current Training Schedule: Fall 2024
Please note that we are transitioning to offering classes on Thursdays, when we have held classes on Wednesdays for many years.
Please note the location for your selected class. We are offering both in-person and virtual classes this year.
Important note: for virtual classes, you should receive an confirmation email from the Harvard Training Portal with a Zoom link. If you do not have your email address on file in the Training Portal, such messages cannot be sent to you. Please contact us for the Zoom meeting details if you do not get a confirmation email.
Class | Date | Time | Location | Training Materials | Registration |
---|---|---|---|---|---|
Intro to MATLAB | Thursday, September 19, 2024 | 10am to 12pm | online | ||
Intro to Parallel Computing | Thursday, September 26, 2024 | 10am to 12pm | online | ||
Optimizing O2 Jobs | Thursday, October 3, 2024 | 10am to 12pm | in person | ||
Intro to Python | Thursday, October 10, 2024 | 10am to 12pm | online | ||
Parallel Computing with MATLAB | Thursday, October 17, 2024 | 10am to 12pm | in person | ||
Data Management: Computing Strategies and Resources (in collaboration with Countway Library and FAS Research Computing) | Thursday, October 24, 2024 | 10am to 11am | online |
| |
O2 Portal - Simplifying the Interaction and Experience of Using an HPC Environment | Thursday, October 31, 2024 | 10am to 12pm | online | ||
Intro to Python | Thursday, November 14, 2024 | 10am to 12pm | online | ||
Intro to O2 | Thursday, November 21, 2024 | 10am to 12pm | in person | ||
RCBio: easy and quick HPC pipeline builder & runner | Thursday, December 5, 2024 | 10am to 12pm | online | ||
Shell Tips and Tricks on O2: HBC Current Topics in Bioinformatics | Wednesday, December 11, 2024 | 1pm to 4pm | online |
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Additional classes will be added for the Spring semester.
Class Registration Process
Registrations are managed through the Harvard Training Portal, which requires a Harvard ID (HUID). Those members of the extensive HMS community who do not currently have HUIDs - such as employees at affiliate hospitals, or collaborators from other institutions - may self-register for one as a "Harvard Sponsored Role” with their faculty member's sponsorship. This form may take several days to process, please visit this page for details: Harvard Sponsored Role (HSR)
Class Descriptions
Classes taught by HMS Research Computing Staff:
Classes sponsored by HMS Research Computing but taught by our partner organizations:
Additional computational trainings available through other groups
Please reach out directly to the above groups if you are interested in attending their trainings.
Contact us
Please reach out to HMS Research Computing at rchelp@hms.harvard.edu with any questions about training. We are here to assist if you are having difficulty registering for a class, or if you are wondering when a topic will be offered next!